species:   Rhsol
pid:       PID0593
parent:    Rhi-milR-1
paralog:   
locus:     KB317755.1:3225-3315
matures:   ['AAAGAGGAGUGUUCUGAUGGAG', 'UCCUUACGAUGUUCCUUGAUUG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317755.1:3225-3315

8 out of bounds
25 alignments
15 proper strand
15 stranded perfect matches

          **************************                    **************************         
AUUUGGCAAACCUUCCUUACGAUGUUCCUUGAUUGCCUCCAAGGUAGGAAUUUUCUCACAAAGAGGAGUGUUCUGAUGGAGGUCUCCACGC
...(((.(.((((((.(((.((((((((((..((((((...))))))...............)))))))))).))).)))))).))))...
-----------------------------------------------------------AAAGAGGAGUGUUCUGAUGGAG---------- l=22 a=0 c
-------------UCCUUACGAUGUUCCUUGAUUG-------------------------------------------------------- l=22 a=0 c*
----------------------------------------------------------CAAAGAGGAGUGUUCUGAUGGAGG--------- l=24 a=8 ma
------------UUCCUUACGAUGUUCCUUGAUUGC------------------------------------------------------- l=24 a=0 ma*

-------------------------------------------------------UCACAAAGAGGAGUGUUCUGAUGG------------ l=24 a=1 
----------------------------------------------------------CAAAGAGGAGUGUUCUGAUGGA----------- l=22 a=1 
----------------------------------------------------------CAAAGAGGAGUGUUCUGAUGGAGG--------- l=24 a=8 (ma)
-----------------------------------------------------------AAAGAGGAGUGUUCUGAUGGA----------- l=21 a=1 
-----------------------------------------------------------AAAGAGGAGUGUUCUGAUGGAGG--------- l=23 a=2 
-----------------------------------------------------------AAAGAGGAGUGUUCUGAUGGAGGU-------- l=24 a=1 
---------------------------------------------------------------AGGAGUGUUCUGAUGGAGGU-------- l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101000
fn-101
